Package: syntenyPlotteR 1.0.0

Marta Farre

syntenyPlotteR: Genome Synteny Visualization

Draw syntenic relationships between genome assemblies. There are 3 functions which take a tab delimited file containing alignment data for syntenic blocks between genomes to produce either a linear alignment plot, an evolution highway style plot, or a painted ideogram representing syntenic relationships. There is also a function to convert alignment data in the DESCHRAMBLER/inferCAR format to the required data structure.

Authors:Marta Farre [aut, cre, cph], Sarah Quigley [aut], Joana Damas [aut], Denis Larkin [aut]

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NEWS

Peer review:

Bug tracker:https://github.com/farre-lab/syntenyplotter/issues

On CRAN:

4 exports 38 stars 2.86 score 30 dependencies 16 scripts 184 downloads

Last updated 10 months agofrom:9623174a88. Checks:OK: 7. Indexed: yes.

Exports:draw.ehdraw.ideogramdraw.linearreformat.syntenyData

Dependencies:clicolorspacefansifarverggplot2gluegtableisobandlabelinglatticelifecyclemagrittrMASSMatrixmgcvmunsellnlmepillarpkgconfigR6RColorBrewerrlangscalesstringistringrtibbleutf8vctrsviridisLitewithr