Package: syntenyPlotteR
Type: Package
Title: Genome Synteny Visualization
Version: 1.0.0
Authors@R: 
    c(person("Marta", "Farre", email = "m.farre-belmonte@kent.ac.uk", role = c("aut", "cre", "cph")), 
    person("Sarah", "Quigley", email = "slq4@kent.ac.uk", role = "aut"), 
    person("Joana", "Damas", email = "joanadamas@gmail.com", role = "aut"), 
    person("Denis", "Larkin", email = "dlarkin@rvc.ac.uk", role = "aut"))
Maintainer: Marta Farre <m.farre-belmonte@kent.ac.uk>
Description: Draw syntenic relationships between genome assemblies.
        There are 3 functions which take a tab delimited file
        containing alignment data for syntenic blocks between genomes
        to produce either a linear alignment plot, an evolution highway
        style plot, or a painted ideogram representing syntenic
        relationships. There is also a function to convert alignment
        data in the DESCHRAMBLER/inferCAR format to the required data
        structure.
Encoding: UTF-8
Roxygen: list(markdown = TRUE)
RoxygenNote: 7.2.3.9000
Imports: ggplot2, stringr, utils
NeedsCompilation: no
BugReports: https://github.com/Farre-lab/syntenyPlotteR/issues
Suggests: knitr, rmarkdown
VignetteBuilder: knitr
License: MIT + file LICENSE
URL: https://farre-lab.github.io/syntenyPlotteR/
Config/pak/sysreqs: libicu-dev
Repository: https://farre-lab.r-universe.dev
Date/Publication: 2025-08-26 09:49:00 UTC
RemoteUrl: https://github.com/farre-lab/syntenyplotter
RemoteRef: HEAD
RemoteSha: 5dd36b9bcdbaba0830b7d5d8c7275df062920847
Packaged: 2026-10-20 07:14:34 UTC; root
Author: Marta Farre [aut, cre, cph],
  Sarah Quigley [aut],
  Joana Damas [aut],
  Denis Larkin [aut]